An algorithm for finding signals of unknown length in DNA sequences
نویسندگان
چکیده
منابع مشابه
An algorithm for finding signals of unknown length in DNA sequences
Pattern discovery in unaligned DNA sequences is a challenging problem in both computer science and molecular biology. Several different methods and techniques have been proposed so far, but in most of the cases signals in DNA sequences are very complicated and avoid detection. Exact exhaustive methods can solve the problem only for short signals with a limited number of mutations. In this work,...
متن کاملA Frequent Pattern Mining Method for Finding Planted Motifs of Unknown Length in DNA Sequences
Identification and characterization of gene regulatory binding motifs is one of the fundamental tasks toward systematically understanding the molecular mechanisms of transcriptional regulation. Recently, the problem has been abstracted as the challenge planted (l,d)-motif problem. Previous studies have developed numerous methods to solve the problem. But most of them need to specify the length ...
متن کاملA niched Pareto genetic algorithm for finding variable length regulatory motifs in DNA sequences
The transcription factor binding sites also called as motifs are short, recurring patterns in DNA sequences that are presumed to have a biological function. Identification of the motifs from the promoter region of the genes is an important and unsolved problem specifically in the eukaryotic genomes. In this paper, we present a niched Pareto genetic algorithm to identify the regulatory motifs. T...
متن کاملdevelopment and implementation of an optimized control strategy for induction machine in an electric vehicle
in the area of automotive engineering there is a tendency to more electrification of power train. in this work control of an induction machine for the application of electric vehicle is investigated. through the changing operating point of the machine, adapting the rotor magnetization current seems to be useful to increase the machines efficiency. in the literature there are many approaches wh...
15 صفحه اولGenetic algorithm for dyad pattern finding in DNA sequences.
In this paper a novel genetic algorithm is presented for the dyad motif finding problem. The genetic algorithm uses a multi-objective fitness function based on the sum of pairs, the number of matches, and the information content. The individuals required for the population pool in the genetic algorithm are optimized by Gibbs sampling method. Also, new crossover and mutation operators are design...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2001
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/17.suppl_1.s207